Scaffold Ga0114346_1013024

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1013024
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5342
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F020167	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_101302411	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGYNMLENLANAVEHARPRWNDESYATRIAISRMVGEEWESETGWGISVNQLADNEHKVPVIDWDKKTFTLFEEDLTTVVFSLTIDEFVNKYSRLVMV*
Ga0114346_101302413	F001043	GGAG	MSDYKDGFQDGYKFAREELMEKLAEIDIMDIDSWILDRLSEMIEGGTL*
Ga0114346_101302414	F000311	GAGG	MYFELTAPNQVALQRAYWSAEMMGLDPQLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSDYEPTGYTGR*
Ga0114346_10130242	F000852	N/A	MIMKGSKMTTKREYLKQQGITVGARGRFSGAAKVAIAEAESKGIKFVAETPVKKAK*
Ga0114346_10130244	F000441	GGAGG	MSDIYIDEQLNKAQKLLWGGSESENIEAHNIIAKLIKERMEDNEQV*
Ga0114346_10130249	F020167	AGGCGG	MRTIDELVNEIYEDNFSHIDFMENMGGDCDCNIHTTLELITKYWWDEER*