Scaffold Ga0114346_1012795

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1012795
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4712
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003964	Metagenome	459	Y
F009743	Metagenome / Metatranscriptome	313	N
F014611	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10127953	F003964	GGAG	VAEVSARVEVVGLKDALKTLNKIDKSLRREITTSYKQIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQILPWIPGMKQKIAAKINTRAIKEYGGNTTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMEEANRETA*
Ga0114346_10127954	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTNPLYSDYCCWMHTILKLKGEQVGDNWREWISKNPELEIIPVLDETDPNPTDAAPTAAN*
Ga0114346_10127958	F014611	N/A	NALGGGNATSWNGNPLGLQLVVDSNFAAKTMIITRVGQGSGDAFEFYESIRGLMSVEVPATLGRTMSFHGYVSTFAAIGGMIRKITQA*