Scaffold Ga0114346_1010521

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1010521
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5290
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040943	Metagenome / Metatranscriptome	161	Y
F068427	Metagenome / Metatranscriptome	124	Y
F089836	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_101052110	F068427	AGCAG	MNLKDYQQPPKTPLSFEEWKGSIAPQYSGDKLKAYDRLYSVDYEKEFNEMLKSEYAEYCDNLNGNWLLR*
Ga0114346_10105215	F040943	GAG	MAYKEKTCPKCGVKHKKRGEFCSRSCGNTRAHKAETKEKIGKAISTWLTSGDERAEAQVHNFTSLGSNKTPDPIAPMKPVDIGHKRFVQDGDLWEEV*
Ga0114346_10105218	F089836	N/A	VYNSKEKQMKTLQEQETQVILSMAEALKALEQQLADAQNRIQALETVIANQRAVIKELQ*