Scaffold Ga0114346_1010456

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1010456
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6857
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F017133	Metagenome / Metatranscriptome	242	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_101045611	F000447	GAGG	MGYIEIFRIDDEGAGWVDLSDATPQELIDLEIGLFQEGAI*
Ga0114346_101045612	F007263	AGG	MLNIIDKTDFYEISDEQHFCCDESQFKYYCEEHLEFMGCYFCGFDYSKNCEDQH*
Ga0114346_101045619	F017133	AGGAGG	MSIWTKFATVNDYPKGMMNLCPCGQVVLAPALYHEGKPYWENPNKCKELFEGVNK*
Ga0114346_10104562	F000684	AGG	MTLSGYTYQIGDLFTTSKTGVTGRIKDFTPINAKLTRVSLQLANGAHRFAMVKTSK*
Ga0114346_101045620	F045756	AGGAG	MTKYNVLISYVVEAEDEMRAVFALNKTLYPLSENEIAKFDPFLVEEVSQ*
Ga0114346_10104567	F004840	AGGAGG	MEYEYVITSAYDSNAPHWTQRYENEFGAWESFFRFTDWGMANEYRTVNLYTPTGKCYTKLFYRNGEVQVKA*