Scaffold Ga0114346_1009516

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1009516
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6817
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F008237	Metagenome	336	Y
F009530	Metagenome / Metatranscriptome	316	Y
F020863	Metagenome	221	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100951610	F046323	GGAG	MTNHFQVVYETKGVKVVNVWLKPDEQLPEQWNTMTCTEQDEWLYEHQVHSNISWVDEYKGNAVNVLPVLSLKAV*
Ga0114346_100951614	F003658	N/A	MLDLRGKPILTCICGCKMFVITVMWDDETREVSWYDLRQECKECGAISTAPTPIDWRDDA
Ga0114346_100951616	F008237	N/A	MTLEWARIEPWQYVVDSVASEYHRKFTDIELEDIRQSLYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLTPVLRSEWGQINKVDLGRPGRPSAPNEGGNMMAMMIEIDYAYWKLTKDDRKLLFLRHAEAMDFPDIAKEMELGSDDAARMRHKRAIRKLINKIGGFKPYSDNDFEQVQQESSEV*
Ga0114346_10095163	F009530	AGGAG	MKITYSIWQGSRLLSIDNNANSPKDIDALITALNDSELGKKTKFTANVQTIQANN*
Ga0114346_10095164	F020863	AGGAG	MQTTVEDLDRLVAVLEELVQPLLEGEVIEATYESNKRPHLVLQLGSKTYGRAYRIFFSGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMIGKAND*
Ga0114346_10095168	F005558	AGGAG	MSESSISWSELAELTHETQVYKFGFCMCEDTEPHEYPYDDCPKTGE*