Scaffold Ga0114346_1009398

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1009398
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7525
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F012770	Metagenome / Metatranscriptome	277	Y
F020863	Metagenome	221	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100939811	F046323	GAG	MSKQFRVTYETKGVKVVNVWLPEGAELPNNWGSMTLTEQDEWLYENQAEAHLNWSDETEGEVVNILPVAELKVVG*
Ga0114346_100939814	F003658	N/A	MLDLTGTPIFTCICGCKMFTITVMWDEETREVGWYDLRQECKECGAISTAPTPIDWKD*
Ga0114346_100939819	F012770	N/A	MQFEDSFELIDHYLEDDEDFDPYYILPNGYKLLLGSLLRFMFNNADEPDQIRLITQSTYVTLFASENGYDLVDELVEDMVVKSALVDFDQNLARLLETETNDDEGGV*
Ga0114346_10093987	F020863	AGGAG	MQTTMEDLHRLVAVLEELVQPLLEGKPIEATYESNKRPHLVLQAGSKTYGRAYRIFFSGGSHYGSGHWEPRGFSDYLGGTKAEAERTLRSLISGIRTGLMIAERGE*
Ga0114346_10093988	F005558	GAGG	MSQESISWSELAELTHETQVYKFGFCMCEDTEPHEYPYNDCPKTGE*