Scaffold Ga0114346_1007660

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1007660
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21121
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (48.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021768	Metagenome / Metatranscriptome	217	Y
F056418	Metagenome	137	N
F070858	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100766026	F070858	GAGG	MPIVIGPGIEIGPGVTAGGGFAPTVSLIYDLDAANYSAVPTNGSVTEGTGTTGERTLTVANAGGSISWQADNGGLFRKSNATGTDSIRGGPNWSTGQSYSVFATYKLSVTSSGRLLNTQSEATRDWMMGAYNGFVNAFYAPA*
Ga0114346_100766027	F021768	AGG	VYTATSAQPTTTSFTATNLGSGGGPNQIRLFSRSAGTEVQTGDIGFVKAYNGILTLGDVQGLYAQYKTRFGY*
Ga0114346_100766033	F056418	GGTGG	MRSESRSSLYYNAYEYAMTWQQDEIGCIRSLDQKKMQSHIRVRMEYEASRNSHYQRYGEKFISKFTTRCCDNLEGMRALLAAETPPKKMVFFNNYLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKTQKSRLAAWITTQGNDVAASKSLREFLDIEIRPTRVYWWRNDVTESYYYIEHNSLQYETMLSMVCPGM