Scaffold Ga0114346_1005973

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1005973
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7426
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F005389	Metagenome / Metatranscriptome	402	Y
F040595	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10059731	F000785	GGAGG	MKFDCVKLMNWAEELLGPSKCKSIAFTWDMEEESLGWYNWDETIWINLASCKRMISVQKTILHEWTHAQQTFRWYNHYQMKYGYKNNPYEITARENEKLVKRAYRKKITNGRTGSQ*
Ga0114346_100597312	F005389	N/A	MANKSKKTAAKRGNIYETVSNNIQKITRPSGTVSYRVRVTEGGEMYSQYANSLKAAKAVRNEWIG*
Ga0114346_10059738	F040595	N/A	MNKLELTPELIGKYINQVLWSDVDPIGKIVGIKGKSKVLIQPVVAGENKAKMEFVPGGFSAVCVNQYNQSYEFTEVGEVFEASLSNSSMKKNFWRISDSPRKFYDYNF*