Scaffold Ga0114346

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1005887 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7503
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7503

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100588713	F045100	AGGAG	MSYIVTSDVFAPKKKGESITEKELLELGLNIDALVAGEHLKNTAAIKPVEEVK*
Ga0114346_10058872	F000368	GGAG	MEQFKQIALSWFRAAAAAAIALYLAGETDLKTLGMAALAGAAGPILKWLDSSAVDFGRGSK*
Ga0114346_10058877	F077306	GAG	MPAFDGTTSPAVTIQFLMSGSFVTVATTDVISINIRRGRTRQSERDQCGTADIILNNFSGIYNPDATSGTYVVGGVSILRDGLQMRIVATIGGTAYNLYYGFLETTRVDQGEAPAVTMTFVDGIAYIADAQAPALAAAANAETAATRVGRMLDIVGWPSGASRSLTGSVGMLATVQNQSCMAMIYQAVDSIAGRFYISRDNVATLVPLANKFSRPTQLLFTDTGASNTVGYMELYTNPGTYFVVNQAVVNRGNANKQYTSTYNPSKNAYGIAKNIFDAPVATDNNAQNLALYESRKLAEPLTYVERIDFNALALADYGALYPDFLATELGDQISVVRSGTQYNLVVEGMAFSIMQNNWMMSYTTSAINPYSITI*
Ga0114346_10058879	F028173	GAG	MADEVIVLSGIKETIDALKEFDKDAVKRFNKVINTELAGAERDAKALIAGVAGYNDDNTPMSGWRKADAAKPSKTVRGGKGWPGWDTGVVQSGIKKTKVQGKVRGDYTTSAGALLNKTAAGAIFEIAGRKTKPGFGGGSGSQFLRTLANRFGKASRVVWRVVDKDKDRIQANVARALEQAKTDLQKHLQGERAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114346_1005887

Overview

Ecosystem & Geography

Associated Families

Sequences