Scaffold Ga0114346_1004320

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1004320
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15346
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011487	Metagenome / Metatranscriptome	290	Y
F014250	Metagenome / Metatranscriptome	264	Y
F021757	Metagenome	217	Y
F023106	Metagenome / Metatranscriptome	211	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100432012	F021757	AGGTGG	MMTRKDYVAVAEILSSYKDLIADNFTYEDLVEDFSSFFAEDNPNFKFDKFREACMK*
Ga0114346_100432014	F007263	AGG	MIKEYIDETKFYLIKDEMRYCCDESQFKYVCKAHGETMGCYFCEFDYSTDCEEQH*
Ga0114346_100432015	F000447	GAGG	MGYIEIFRFDEQGAGWIDLDSANPTELFNLEVGLLNEGALFTTKEAN*
Ga0114346_100432016	F000808	AGGA	MEYNYSLTIAYDGELVSTTRSADMLEVVNAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRSGMVVVK*
Ga0114346_100432021	F011487	AGGAG	MGNLSDEFYDEYYATVCPSCKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLDY*
Ga0114346_100432036	F014250	GGA	MNNLTLAPRLQNLVDLGESGTDILHGELKNLMLEAETELLYWQKVEEDTDYGDAMDSMERKYAEGLLDAYANVYELTYQLAFAISDRRKNLSE*
Ga0114346_100432040	F023106	GGA	MRISRRITEEEKVANKLGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYANNNI*
Ga0114346_10043205	F048982	AGGAGG	MVSTQLIDVLNTCRKIRNNNHDSGTHYLLGYLWACISEKEKKRIAILFDNDLKEMETK*