Scaffold Ga0114346_1004191

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1004191
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10684
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F011067	Metagenome / Metatranscriptome	295	Y
F043822	Metagenome	155	Y
F067396	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100419111	F067396	AGGAG	MNRELANQLLDKAREGHRFTFEQISAALYATGDLHDPMRGEGMEKSLQAEDQAAGQSESPKLVVASEGRHSQDSWAGWSKYLDKRNAQAAT*
Ga0114346_10041912	F011067	AGGAGG	MIRMCDTGYRECPRQPTCGMDCHFTTAELETRKVKPYPAVPQDIEPVPETWQVIGSVVVGFVLVALVVIAALFFFTGFYIWSLLI*
Ga0114346_10041913	F001688	GGGGG	MFKYMWTEFRSTLKMLPPAQTAAHELLHAEHDLLRAEAGVEYAQAMVTCQKQRIKRLKAYLGKTEEVAT*
Ga0114346_10041919	F043822	AGGAG	MNVVFDEMIDGFRFTGLAEKEQGEAATEISPSWPTFYTVFALHVDGSHKDFMDIINPAIIQRIETMLAEDV*