Scaffold Ga0114346_1003560

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1003560
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26248
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F004006	Metagenome / Metatranscriptome	457	Y
F068743	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100356018	F004006	AGGA	MTENVEDLVKSVSLNQILVAILEEQGKVTVPTLRFLDANNDDKELVIDYDSETLSFTFSLRSKNEQ*
Ga0114346_100356037	F000376	GGA	MSIYQDRAKECKCCGKHVPLPTVMREFNGITVCPTTFANIMEYTRIWNTYGSRPPGGTRKHFSEYVQQIVEQSIDKPSE*
Ga0114346_100356041	F068743	AGG	MPWNIKRNTAGCKGFAVVKESGELVGCHVSESKAKAHMRALYASEADNKKINKSILRGDNK*
Ga0114346_10035609	F001464	AGG	MARSKRHRTRKKFVYFFLNDKIHKVLTRSRAKDELVAWCYPDGKRVLYSLSLVEKTMKNAYSTAEVAQILNRHKITIEDYIIDGKIKTPQIVYPIGNPESKWYKFMFSESDVMDVHQFILDAGYTNTLPSKAELQAILKHNLILYTKTEEGNFVPVWKAE*