Scaffold Ga0114346_1003030

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1003030
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20446
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (60.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F035768	Metagenome / Metatranscriptome	171	Y
F038245	Metagenome / Metatranscriptome	166	Y
F039639	Metagenome / Metatranscriptome	163	Y
F045760	Metagenome / Metatranscriptome	152	N
F066790	Metagenome / Metatranscriptome	126	N
F078719	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10030301	F004133	GGA	MKYTKEITDKLIADYRSGVAVAEIATTLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLAQSDPKLHYTRQTDHLFADV*
Ga0114346_100303012	F039639	AGGTGG	MNIDREFIKWFYEEHYPEQGSNRRQCYGMTAGTTNIDTIDYWMREAFKAGAQAASNSYEVNALEQFEAFNINRNYPL*
Ga0114346_100303013	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNRPKGFTDIQIPVGNLDCETPTVRIRYEKLRWHDGTLKTLLVTPDEELALTLNPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS*
Ga0114346_100303024	F015601	GGAG	MARYTKEFLIDAFMSRYISCDMITIEKLERLEKMANDLYDRVGRDSFRVYACLDAEAVREYKATQ*
Ga0114346_100303030	F066790	N/A	MLSNLMQRVRDMFKPYTLEDFICEADPKDYKDIQRLEAVWQNYQERKLFNNCY*
Ga0114346_100303039	F038245	AGGA	MKIYFGNANDDMFGDGLFEANNNQYYYGVEHGTGPGGLDEVRLFDGCNRYLPVHVEAIPELIAALQEIQKIQQAVKQAQEMTERAESNIEGYVYNSWNDEFEVDFDTE*
Ga0114346_100303040	F045760	GGAG	MASVSKSKQAYSALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPNGKTVWSHGNIRLAKLFKEFTGRASVDLFSSNPKVQSAALAYRPDWENVKVIEGKVSFSLGARAHDSKGNLVWK*
Ga0114346_100303041	F078719	AGG	MEIIEVYLLFALTTGITSCYLFLLPAIALARDEGIQNSFTENTWLSCLIYITITTITAPFAILPIFIPSFAERFKIGLERAVMENQI*
Ga0114346_10030308	F035768	AGGA	MKITIEDRLLAAYQAQQMRLRNREDEDYRARVEIKAFERIIIDRVQRNLRLGLDKGNNIDLEV*