Scaffold Ga0114346_1001795

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1001795
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14727
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F004006	Metagenome / Metatranscriptome	457	Y
F025747	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100179522	F000369	GAG	MSEIELADHFDRMNVVVSELLKGNNPTQIATVTGFKRAEVVELIEEWKSVVHNDTAARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAELANQIAETERKQDILVKILKEVTASCPKCKMDVAKRLSQITGIVEPIEIVEESSGS*
Ga0114346_100179524	F000376	GGA	MSIYQERAKECKCCGKHVPLPTVLKEYNGVPLCPTTFSNVVEYKRIWKSFGSRPSGSIRKHFSDYVQQLVETTINESENVISNEP*
Ga0114346_10017954	F004006	AGGA	MTEDIEGLVTSISINQVLVAVLQEYGKLTVPTLKFLESKAEEKELVIDYDEDGPSFTFSLRDKVEQQ*
Ga0114346_10017957	F025747	AGG	VPDLNEFISSEKIHAPELERFGGKKPCSKCDKDAEEYFWDAVSLTMSWECPDGHKNSFRIN*