Scaffold Ga0114346_1001708

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1001708
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15181
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003266	Metagenome / Metatranscriptome	496	Y
F031029	Metagenome / Metatranscriptome	183	Y
F039507	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100170810	F003266	GGA	MTTNHDTVKNTLDIISVFATIGSFLEMLTPIFGLIGAIWTVMRIAEMIAGKPFAELIRRKKPNASDE*
Ga0114346_10017082	F031029	AGGAG	MFKSGAQGVNTKGKTKGKNLGDSGPTVAIQKGKAGKGGKGGGKTDADMLSMGRGMAKVANQKRG*
Ga0114346_100170820	F039507	AGGAG	LDNSRVLAYIAKEIDKLRNDQNSFLSGGGAKTFDEYRHVCGVIRGLTHAETIVRDLVQRMEQSDE*