Scaffold Ga0114346_1001351

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1001351
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29034
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (78.69%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F008245	Metagenome / Metatranscriptome	336	N
F026561	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100135112	F000369	GGA	MELELADHYDRMNRVVEELLKGNSATQIASLTGFKRAEVISYIDEWKEVVRNDSTTRDRAKEAVSGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQIADTERKQDILVKILKEVTAVCPKCKLDVAKRLSQITGVVEPVILDPEEARGS*
Ga0114346_100135114	F000376	AGGA	MSTYQELAKQCKCCGKHVPLPTVLKEFEGITLCPTTFSNVIEYKRMWLSLGARPSGNVRKHFSEYVQEIVEKSFSQNV*
Ga0114346_100135136	F000473	GAG	MENNHFKHGINLWTGEPNKPVFYTKEMAKRVREIQKPAHDLQIDIVKYPEFLAIRLYEDNFIQYHGTKKEMVIEYVSKVKKLIESYGVRCVLEGKPSERVL*
Ga0114346_100135138	F000671	GAGG	MDKITCYSCNKSKHKLNVKMSSILPISLLMCESCINSKYEPRWTIILAGRQNGPESVREFILKKRYVGNDISAFELIV*
Ga0114346_10013514	F008245	AGGAG	MTDKNTLELISDITEFNDLHEYMKDEHLDRAMGIVIKMLMTPDVPAAKAPQLIIELQAMSAKFGMLAAYYTTVGKDKAGSVNNNKKNVYYSVKESIDKLVDALKYIVRYNG*
Ga0114346_100135153	F001280	AGAAG	MCVECGCESVGSETGVVGVSINDASRSGEAGLTLGMTATPEQRERFINE*
Ga0114346_100135154	F026561	GAG	MSDNGTGMQTPPNNQPSGAVTSREAGKKNPSQGKFRSGLKVDTNKHGIRRETSTAPKPKKTRPKKV*