Scaffold Ga0114346_1001254

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1001254
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19009
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F011844	Metagenome / Metatranscriptome	286	Y
F093875	Metagenome	106	Y
F103223	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100125411	F011844	N/A	MGQILGSLQNIEIDVAGGSSYKNLVCLRTASVNTTVDSTTEQTNCGPLTSVADATMGLDFDAICEVAPTVAQVSYEDLLAAMAAKTLVAVRVQSPVVSGSSAGAAYYHQFLGYITSLTLNQSTTEFINFSGTVTSTGTIDVTP*
Ga0114346_100125412	F103223	N/A	MKDCSNNIRVQYLSKLNGNITYGGKNVPVYGNDTFETMPQNYIIIGDITESADNNNQLFVSMADVVIDIFSEQYMTRNNSIIDDIADQVLTLLIPTTGVQDMGDAEFQIYAKARTSSRYLTMQEGNNFINRKILIINNSIIQK*
Ga0114346_10012545	F093875	N/A	MIGEHNLRTIKRGDTWVLPLSFWEDECQEVAINVSTYTFKLMAKNSSGTTIFTWDNAIFVQGATNERTVTLSAVTTATYTIGEFNYELQVTTASGVFTWMQGFVQVVDQITS*
Ga0114346_10012549	F004112	N/A	LPNDFYAISPREFSLMIRGSETRKVDTYKQTRLLMFTMVRLMGDSKTAPKTPEALWQLPGDEESENVMSDDEMREIFKRLGK*