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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008113 Open in IMG/M |
| Scaffold ID | Ga0114346_1000634 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47248 |
| Total Scaffold Genes | 79 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (70.89%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002869 | Metagenome / Metatranscriptome | 524 | Y |
| F003826 | Metagenome / Metatranscriptome | 466 | Y |
| F014736 | Metagenome | 260 | Y |
| F021106 | Metagenome | 220 | Y |
| F034468 | Metagenome | 174 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114346_100063420 | F021106 | N/A | MAGWNTIQTIRRLEERAELLGMRFTAYKHEDVYGENVALVPLDLAALPIYSRDAVLFAGSLESADKFMQGVLWARDYDRMLKISDVAKRERKEQDERNRQMVKLLKSEKLTLVNK* |
| Ga0114346_100063440 | F003826 | GAGG | VIVDPITIGLAFAAAQSAVGHIKQAIALGKDINSLYGQFSKFFDSSDSIHRARSKAKAKAQLLGKTDAELGSQALQLAMHSDALRQAERELKDMILWQLNKPQIWEDMIKERTRLVKERAAAEREEEKRQLEHKKKMADTFMLAMYFLAGSVVVATFGMVGIGIYGQMEERRIYEQKVAARIVVIRQQQKERVAKEQKERDDYAKGSK* |
| Ga0114346_100063449 | F034468 | N/A | MNYPFYITYDLVEEFLQKHDFHCVFELDAPMKIFTRLMTAEFYTTADIPGRGAEFKQCWALSEIYCPHEGIDRRSEYGMETV* |
| Ga0114346_100063452 | F002869 | GAG | MTNEITTEMLDRKIAWCKQNAFWGTPSAVPKVLDFYFEKTRTSVDEDWPESFSLQDLADTLGEDPVRYRIYYSQDNLTLRLFVFRPQCTWDEQKIMLGLGFVVAQPGDADNIPNQAVEEDEVEGVDP* |
| Ga0114346_100063475 | F014736 | GAG | MNMPIVPDNVIKFWADPRFEILAEMDKLLNGSKIWGGQEWVYHPIHPVKYQPVAEKVRVAMDALKAEYGVEE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |