Scaffold Ga0114346_1000103

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1000103
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110311
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (15.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F015337	Metagenome / Metatranscriptome	255	Y
F024553	Metagenome / Metatranscriptome	205	Y
F040094	Metagenome	162	Y
F055726	Metagenome / Metatranscriptome	138	Y
F101129	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100010355	F014975	N/A	MEKLFQQFKNMLVVYPNYQGHVCGYNDAHFIVAVETNDVKNFFRKLETPYIMEEYKDTKYRYVFADESQLLKQANDALYKKAVTKN*
Ga0114346_100010370	F101129	N/A	MNQKINIGNLTVEVFFNEYDKVNKTRKQIPGHELTRQDRAAIDRGLDDTDFGEFYRYENGDIEITGMFNVVDSRADELG*
Ga0114346_100010383	F055726	N/A	MDWILEDWEYPNDEIYAIERQKDIEAAMYQWEEEQLSKKKPAIVKVVKPILTDEAECNTTTVRRAHQKRL*
Ga0114346_100010392	F024553	N/A	MAKLNEEIQKVIDNASDVLYREEIYINDRHEYDYHKLQATPDVEVHTLYFSDDDSWADNIKKQVAMQLVDNGDGIEIIGACTKKHLNYLEAEQLHILLRLSSTHCVYQITEPAVKKEF*
Ga0114346_100010397	F015337	N/A	MKTITMKPVEFYHFRQLAFAMSIAFACTIAQGVYIVEANIDQLEKLGY*
Ga0114346_100010399	F040094	N/A	MRPRISRGTLVGSTNKLRAIKAKRLVVEVIYNFRHGIVREKTVSLRQTIEQ*