Scaffold Ga0114345_1034459

Overview

Basic Information

• Taxon OID: 3300008112
• Scaffold ID: Ga0114345_1034459
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1437
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F019778	Metagenome / Metatranscriptome	227	N
F024477	Metagenome / Metatranscriptome	205	Y
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114345_10344591	F019778	N/A	MSSEVASQTELIFLYIGESRLIKRISNDILLVLHEDAKSINTIKIKELLQFKIRGRLSYLYHLAMSTIREEAMYASALYTQLDSLLAILSLDDKVIAIKLITKICSAYRVSKET
Ga0114345_10344592	F017597	N/A	MKEIFRSETSLIKLAIKKKELIKTTKSSKSVLIKIEMITRILIAALKAKQVIAIRFQVNRTNNLLIWGQNPSIS*
Ga0114345_10344593	F024477	AGAAG	MKSSSFSYSMVKESSKAFSFEVLIKNITLIEKVEDFCKSLDQITGYRFNYHGKPDPDIYYMRDIIKIKLMELERLQTQRINELIK*
Ga0114345_10344595	F039941	N/A	MDIETLALRLEEIRLSRMEVLEEKKVLAEELLAGSLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYRQQSS*