Scaffold Ga0114344_1068006

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1068006
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008235	Metagenome / Metatranscriptome	336	N
F016959	Metagenome / Metatranscriptome	243	N
F091905	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10680061	F008235	N/A	MINYLKNLFKKKTEPETTPVEQPKNKYYLAKYRANVSLHITYNQLDTDGYHEYRQYENIESDDNLVFLEQKNKKIKEYQETISNINEQLKDNSSEYIMVQKVFLFKKSDFVNAKIIIK
Ga0114344_10680062	F016959	N/A	MSKPQWPTLKDRLQHPLKDELTALHQLKSVLPLSKQAQKLYDKLSKKSIQEKD*
Ga0114344_10680064	F091905	N/A	IMSINMNKPIGATQKQLEENNIEWVYCPDYRHRGTYEPTWELRHSSEYDWAKDRARLLQEIANLKRDCHHLTQCIDPFDTNDYTYNILRKYISELPEKHPMDK*