Scaffold Ga0114344_1038513

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1038513
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1875
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048095	Metagenome / Metatranscriptome	148	N
F091313	Metagenome / Metatranscriptome	107	N
F091933	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10385131	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTINSDIAILTLIYEANIATLENILEAPDFELKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE*
Ga0114344_10385132	F091933	N/A	MERNNRRRITFENFKGGLKIVLAYTNIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNETALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI*
Ga0114344_10385134	F091313	GAG	MATQSNDNSSTPQYRLIDGRYKIVPQFLQPTNSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ*