Scaffold Ga0114344_1020207

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1020207
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2702
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012849	Metagenome / Metatranscriptome	276	N
F017959	Metagenome / Metatranscriptome	237	Y
F051731	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10202071	F017959	N/A	RYLMPREFYDSIANTLGNGGVYKLWFPNYSVYTGNPVLATNKNCTTSFSISTKSLDYVIGTFRIPNYDRPDEVLNTLKSKPESLEVGETLATAESQISAGLRRVYNQSRYFAHNGDSIKTTQWKIGNTPYEAQDLKEQFNSLMQHFNIHQDTLSGMYPGINSLGAFREHSYASIVSLNIPGESEMYTVSGLDTEQTPATVEWKVVSEAFTANNITTANNCTPYLIAAYNSHIEIKAGRVVSLIP*
Ga0114344_10202072	F051731	N/A	MNTFEHNRNILKSINTFNLLEKTRYEAPRDTKQIKFSNPLPKQRQHKIIDNSKINNPYIGIAHIDYVKKDTPPYYGLHETGSKSISYEDFFKVK*
Ga0114344_10202074	F012849	N/A	MKLLYKFNFVKFQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKHIILDDIYPTMSAFITEEQFKNLYDYATVESYDALVIDATKGRPIFKKNFESILKIN*