Scaffold Ga0114344_1019977

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1019977
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6503
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013886	Metagenome / Metatranscriptome	267	N
F044443	Metagenome / Metatranscriptome	154	N
F050232	Metagenome / Metatranscriptome	145	N
F090299	Metagenome / Metatranscriptome	108	N
F101154	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_101997716	F101154	GAG	LLNEENEVDVTSDMLNSYRSNTKKRVTKKGLEKYFNNLILLMQSRELV*
Ga0114344_10199772	F050232	GGAGG	MKYKYSVRIHNVSTTEELETIMNEYGSKGIRVIKADFLGSKLVNCRQEARYTLYLEEKILRREN*
Ga0114344_10199774	F044443	N/A	MLNRIIEQFKQQLESLSIYLLLVTVIYIIIASIVFAFRHQWATDMERFIHIGDALMFNKISYKEMREEYEER*
Ga0114344_10199778	F013886	N/A	MNNTIEKRNAFAFKAKVGESQEIQLCICIRENDKWLENEIFSIPEGHPELSPYIDEQLFNIVFIGYERDENKEGFWIKHQNSFYMKSDTILTEDLLNNGEFFTTIEKGYQSFYEQSITSEREGEQTSSSEQENL*
Ga0114344_10199779	F090299	N/A	MKKVIVSKVEYEFLVSLLEELYIISPDETISDKWISKLEPTKKLFDLELEFYNIRNDYQTPTKKEMVKWLLEKIKNKN*