Scaffold Ga0114344_1015907

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1015907
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3074
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10159071	F043404	N/A	VVGYDVSTYKRTKMIDTTDPILNELADHFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIVIREKK*
Ga0114344_10159072	F016662	GGAG	MTYLVATTEVIYDEQDLIKMMLETGEYGIHGYPISHEAMIEFVKDQEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNKYEIK*
Ga0114344_10159073	F030094	GAG	MEVPQLEWDSYLDKNPDFDENDRDDIQEMWDYFKIVVGCYDECDDTVDTDVIMTGIETYGVEVEIN*
Ga0114344_10159077	F081267	AGGAG	MSYQHHWVVVYDEDWGAFMVDIETTMAKLSEDQGVVYNKATGKWEFMEEGSELHLEYLRLEEILAYNLTRLDLTAGIG*
Ga0114344_10159079	F007525	GGAG	MTKLLEGVTVEYKEVIPTSKQMAEFYVWGEGYESYATIRYEDRVVEVERGGEMYLSIPDVTNGELSEHYQNIVRYSDDLSDIGINDDIQLTQFIKTISNSGYQVYHMNPWWEVFSHNSDMGEVYDTFYEAIDGGIDYILDDRNW*