Scaffold Ga0114344_1009336

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1009336
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6566
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003422	Metagenome / Metatranscriptome	487	Y
F005741	Metagenome / Metatranscriptome	391	Y
F074872	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100933610	F000311	GGA	MYFELTAPNQVAFARATWDAELIGLDPMTIAPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR*
Ga0114344_100933611	F001043	GGAG	MSEYKDGFDDGYRFAREEIMEKLAEIDIADIDSWILDRLSEMIEGGNL*
Ga0114344_100933613	F001125	GGCGG	MGDRANFGFRDRKGDTVYLYGHWAGYNMLENLANAVQAARPRWTDESYATRICISQLINDGWNQETGWGITVNELADNEHKIPVIDWSTQTFTLFEEDLTTEVFSLSLDKFCTKYSQPVMV*
Ga0114344_100933616	F001460	GGAGG	MLGYEMADIDEMINAVHDAKLFYLRTPSDLIDKEPLVKSLEKTNDFLQGLWAEGYFDGYQD*
Ga0114344_10093362	F002245	N/A	MKVPHTIVFEAIIDLDKIPANMLPTLIALPENAIQEMCKGATLNALSLSNTLEVANTGNYWAELTVKDSE*
Ga0114344_10093364	F074872	N/A	MLKYSPNKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSNSAILNA*
Ga0114344_10093366	F005741	AGG	MANRFRIEIYDANKANDVTIYSDQGVDREYLSELVFSNIRKFNGRVNAYVYDNVKKKKVTAMFLDESIANKFQTI*
Ga0114344_10093369	F003422	N/A	MTNELISSKYTFACDPDECDCLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTNQTKEEQMETTTPSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLQDKINNAKDIIAEAYADSQDQDTLRSIAEALGIELTRTVEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*