Basic Information | |
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Taxon OID | 3300008111 Open in IMG/M |
Scaffold ID | Ga0114344_1004795 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5901 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018327 | Metagenome | 235 | Y |
F029664 | Metagenome / Metatranscriptome | 187 | Y |
F054610 | Metagenome | 139 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114344_10047953 | F029664 | N/A | MPEWLKRLTKADIRNSLAIIIVLGCFGLMYLLQVKAIPEENHDIVNIVAGFIFGGALAGVVGFYFGATKSDKTTKHED* |
Ga0114344_10047956 | F018327 | N/A | MGSIKYIFTLLIIIFSLSMSAQNYIKVLPQAGLTSEQRAEAISYELWAISRPPAIRNPNDVTTYLFGWVKHPTQDSGYTDIVNTALEVDLNYNIIVHPENNLTNLIALFPELSQAESDGLAAFIESQQSFPFQYIVPSDVTVFTYEQMKDAGWFP* |
Ga0114344_10047959 | F054610 | N/A | MSPTLNQIIKKLVTIAAAHKQVRTAKHVKAEDFVVFDYKDVDYPAVWYTLNTSAISGKEKTYSIVVTIADIHHVENMDELEMQSDCELIGHDLLAQIGWDKHEWTMQRSANFEYFRQGQEDVLAGVTFQIDLKVPIIYDACQAPSNYELPNGNFVYINTNRFMTVADFIAGSGQPMEQDDTEYQNNQLTIAPFVFIDGILQTYVVRSDRRYISHNATTKTITINGGVNEGENIRILL* |
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