Scaffold Ga0114344_1004795

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1004795
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5901
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018327	Metagenome	235	Y
F029664	Metagenome / Metatranscriptome	187	Y
F054610	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10047953	F029664	N/A	MPEWLKRLTKADIRNSLAIIIVLGCFGLMYLLQVKAIPEENHDIVNIVAGFIFGGALAGVVGFYFGATKSDKTTKHED*
Ga0114344_10047956	F018327	N/A	MGSIKYIFTLLIIIFSLSMSAQNYIKVLPQAGLTSEQRAEAISYELWAISRPPAIRNPNDVTTYLFGWVKHPTQDSGYTDIVNTALEVDLNYNIIVHPENNLTNLIALFPELSQAESDGLAAFIESQQSFPFQYIVPSDVTVFTYEQMKDAGWFP*
Ga0114344_10047959	F054610	N/A	MSPTLNQIIKKLVTIAAAHKQVRTAKHVKAEDFVVFDYKDVDYPAVWYTLNTSAISGKEKTYSIVVTIADIHHVENMDELEMQSDCELIGHDLLAQIGWDKHEWTMQRSANFEYFRQGQEDVLAGVTFQIDLKVPIIYDACQAPSNYELPNGNFVYINTNRFMTVADFIAGSGQPMEQDDTEYQNNQLTIAPFVFIDGILQTYVVRSDRRYISHNATTKTITINGGVNEGENIRILL*