Scaffold Ga0114344_1002226

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1002226
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19555
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (14.29%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F003038	Metagenome / Metatranscriptome	511	Y
F019119	Metagenome / Metatranscriptome	231	N
F025233	Metagenome / Metatranscriptome	202	Y
F032245	Metagenome / Metatranscriptome	180	Y
F044374	Metagenome / Metatranscriptome	154	Y
F049561	Metagenome / Metatranscriptome	146	N
F077197	Metagenome / Metatranscriptome	117	N
F096905	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100222611	F000716	N/A	MIKPMYIMEKLKKQVRNYQLYAGKTYVQYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQITIKYSNAIFNTLFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKDAPLALPRLKYEVKA*
Ga0114344_10022262	F025233	N/A	MHLVIANIMFVLQLHSGIIIPQGDVDGRYIYSVPSAGIEYAYKAEIIQYLETGEFDYNEDLED*
Ga0114344_100222625	F019119	N/A	LKRIYSEKMEKKITHEMLELSAQIAKEHYELTENVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDDEIKNMIRMLESSDEENLHMVTLSIKSFRNLRILEHGEYSKVSQVYWKIAKDYPHEILNHEVFMQTMSPANN*
Ga0114344_100222626	F077197	AGAAGG	MFLPIEFQDQDGPYFEHLNVTHITRISFVNPRNPDAGSKIHLRTGEILKTTMPFDVLSQEIDDAWESASTLILSTVLSEKAKLMKKSDLQLEGTDQLPPLSEA*
Ga0114344_100222631	F032245	N/A	MREIFIRMSQMGLTPNMFYVLYCMHNNIVPDKSVNTSLEVSKLLSGNYLTESLELSGNSLKFIQEIDGFFKKSKKKTSKDLMGDSFQDNLKLYNEIFPKGKLPSGVPARVNIKGLENAFRWFFENFSYSWYTVLKATEKYVDEYSMNRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMIEADDYEEPNYFKEHIV*
Ga0114344_100222634	F044374	N/A	MSRKEKEKEFFAHHMDKFRKAQVTDPYFTIKTAFFQKGKYGRQVQLFEGELKRGEDIFIEFIDINRDGSGKETGIESAFEDRPLFRYKHNPYFAEEYDVKEGTNSNGENYFAYTIPLSELMVIMPDGSEITYNLYEKRKAEAPKEQVTLSVFPDFEDEFIPKLKDVSLDIEESASDILLRIASEFQKLATKIK*
Ga0114344_100222636	F003038	N/A	MALSTTDLGTAGSGLPKTITPGNHVLKINSIELEEFKFIPGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKSGVKIQRDRSILIFLRTLAHTMELDSWFLEQDGQHETIEDFVKAFNKTADFRSKFLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGAVEGGVVIPYDETKHLKKLEVKEVKSFGDDDDVFLKPKSSSDFSLD*
Ga0114344_10022267	F096905	N/A	VESKIFTSVLGFNFELNLVDNDGQPVKIGARRIDYLSSETPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND*
Ga0114344_10022268	F049561	AGGAGG	MTKIRVELEETDLYNSLKSIIKHSNSEEIAKALTSIIVPHEKLTSIFFKTYFGGSAPPVLPEGTMVTVNPNKLSYKTNVEGMKRLGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDNKSYEDTGFISYQDVITVIEDL*