NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1000875

Scaffold Ga0114344_1000875


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1000875 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15656
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (80.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F010749Metagenome / Metatranscriptome299Y
F025012Metagenome / Metatranscriptome203Y
F045751Metagenome / Metatranscriptome152Y
F057139Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0114344_100087511F025012AGGAGMEAQSREYFVRRLNEIAEAKMQARAVELFGPSGRPQQPTWGQVFEAIRSGEITLKEDKMDYTGPYLNPQDVVWPAMEAKKQALCDYQGVVNAEKQKAMDSVYLDSDAQKALTAFQGI*
Ga0114344_100087532F057139GGAGVNVVKLNRNYNGYGYFSHRVEFYGSQDYRTRQWIRVRNWLWSQFGPSAEQNLARADYFDGAQPKWAWDSEKSSIYLKDEAYTMFTLKKEFWDNAENL*
Ga0114344_100087533F002052GAGMPRIYNFQFVVECQGAGEPDLDRVEELIDLAMQDLVYDDEFIAALDEKEAVSIQTILVK*
Ga0114344_100087536F010749GGAGGVTKKFTFWRNAIISEIYVVECETEEQAREQLQNGEVEVFTEEWVDWATSDFELEHIEIVDPLYRMVKDHQIAE*
Ga0114344_10008757F045751N/AMTISDACQLVTEYADLHFGGDVLAALNDMQFCYDDLDKEDKVAYNMFMDAGRKMFAPLEQ
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