NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1000743

Scaffold Ga0114344_1000743


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1000743 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32512
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (14.29%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001345Metagenome / Metatranscriptome718N
F001981Metagenome / Metatranscriptome608N
F006621Metagenome / Metatranscriptome368Y
F010395Metagenome / Metatranscriptome304N
F010464Metagenome / Metatranscriptome303N
F011215Metagenome / Metatranscriptome293Y
F014844Metagenome / Metatranscriptome259Y
F021095Metagenome220N
F027126Metagenome / Metatranscriptome195N
F035673Metagenome / Metatranscriptome171Y
F044457Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0114344_10007431F006621N/AEEAQVQARMDSLMMVITTLCDCIGAVDDSNAPNQYEVKMKIVNKISDLIDKIEY*
Ga0114344_100074313F021095N/AMLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPTTSYGFFDVAKVVEILITPTKPTLTQTGFVDHAGYYSGYRLDFMEEYGNTPAVQTGTVTTVSGVMGFAGNLEQLEFQDWSLSPYFRIGSSFNSVKPLTTPTAFTVYRGGNAWLAINATKFSAVSPNDTWLVSGRVAYKGVNYDIAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFFSNTGAGSAITTFTFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114344_100074325F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSEDWTLSASVSLTRFVESRDDRTAGWQATMTFEIPFGHSVCEIPS*
Ga0114344_100074327F014844N/AMLIGYGYGYPTNMLQGGVAAGVWALFNARATADGATAAEAAVDGCLFNRFAAIYNF*
Ga0114344_100074329F027126N/AMATFRKYEFAVYADFRTINDSEVEPRTVVELGHINPANPKAWCVDILWEGDEPKNWTKYQTWPEPVGIHTFAGWDEQYTKDYNHHKSL*
Ga0114344_100074331F010464AGGVNLIETSVVTTLGAIAGGVVAWFTKGRFESESLQVKQAQAVLAMWQATAEAQNKELVELRNEVVSLRQRLEEMEHTIHELQSENAKLKNLK*
Ga0114344_100074334F010395N/AMHEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKACELLGYDPAMAQWAATKEVSIASQQNLADEVQVNYFHALNPEE*
Ga0114344_100074338F011215N/AMNLLEQMNADEFRKLLEFKEKFPTIGLDLVRALTEKTLCIQLTLGECIDLSNAIGIPYGQYCNQIFDAFKSKP*
Ga0114344_100074339F001981N/AMTYPTLITIPKSDICKAEIAQIAQQLTERINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEAAKHGKTFQAFGAEITLKEGSLTPNYEEDPIYADLKSQIKAREELLKMAFRQAGKTAIFDESTGEQVPVCSAKATKASIAVSFR*
Ga0114344_100074350F001345N/AVNAEATILDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKIIKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQEEGKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGFSNPD*
Ga0114344_100074351F035673N/AVVLRFAICEAEAVFVYDLLRVLAWLCPDSADLPMVLGPGPWACLICHRNNHPGMDLQMTNEQFVVAQKHRKYWDQYVASLTMRLPPDAVGELQTILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTVNIPISNAPTNPEG*
Ga0114344_10007438F044457N/AMKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFDGMAEFDHIVARDEPDNIESHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTRNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPITSNYTLTWDDSYLDLTIACIEQKLVAFPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF*

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