Scaffold Ga0114344_1000743

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1000743
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32512
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (14.29%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001345	Metagenome / Metatranscriptome	718	N
F001981	Metagenome / Metatranscriptome	608	N
F006621	Metagenome / Metatranscriptome	368	Y
F010395	Metagenome / Metatranscriptome	304	N
F010464	Metagenome / Metatranscriptome	303	N
F011215	Metagenome / Metatranscriptome	293	Y
F014844	Metagenome / Metatranscriptome	259	Y
F021095	Metagenome	220	N
F027126	Metagenome / Metatranscriptome	195	N
F035673	Metagenome / Metatranscriptome	171	Y
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10007431	F006621	N/A	EEAQVQARMDSLMMVITTLCDCIGAVDDSNAPNQYEVKMKIVNKISDLIDKIEY*
Ga0114344_100074313	F021095	N/A	MLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPTTSYGFFDVAKVVEILITPTKPTLTQTGFVDHAGYYSGYRLDFMEEYGNTPAVQTGTVTTVSGVMGFAGNLEQLEFQDWSLSPYFRIGSSFNSVKPLTTPTAFTVYRGGNAWLAINATKFSAVSPNDTWLVSGRVAYKGVNYDIAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFFSNTGAGSAITTFTFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114344_100074325	F000847	N/A	MSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSEDWTLSASVSLTRFVESRDDRTAGWQATMTFEIPFGHSVCEIPS*
Ga0114344_100074327	F014844	N/A	MLIGYGYGYPTNMLQGGVAAGVWALFNARATADGATAAEAAVDGCLFNRFAAIYNF*
Ga0114344_100074329	F027126	N/A	MATFRKYEFAVYADFRTINDSEVEPRTVVELGHINPANPKAWCVDILWEGDEPKNWTKYQTWPEPVGIHTFAGWDEQYTKDYNHHKSL*
Ga0114344_100074331	F010464	AGG	VNLIETSVVTTLGAIAGGVVAWFTKGRFESESLQVKQAQAVLAMWQATAEAQNKELVELRNEVVSLRQRLEEMEHTIHELQSENAKLKNLK*
Ga0114344_100074334	F010395	N/A	MHEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKACELLGYDPAMAQWAATKEVSIASQQNLADEVQVNYFHALNPEE*
Ga0114344_100074338	F011215	N/A	MNLLEQMNADEFRKLLEFKEKFPTIGLDLVRALTEKTLCIQLTLGECIDLSNAIGIPYGQYCNQIFDAFKSKP*
Ga0114344_100074339	F001981	N/A	MTYPTLITIPKSDICKAEIAQIAQQLTERINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEAAKHGKTFQAFGAEITLKEGSLTPNYEEDPIYADLKSQIKAREELLKMAFRQAGKTAIFDESTGEQVPVCSAKATKASIAVSFR*
Ga0114344_100074350	F001345	N/A	VNAEATILDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKIIKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQEEGKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGFSNPD*
Ga0114344_100074351	F035673	N/A	VVLRFAICEAEAVFVYDLLRVLAWLCPDSADLPMVLGPGPWACLICHRNNHPGMDLQMTNEQFVVAQKHRKYWDQYVASLTMRLPPDAVGELQTILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTVNIPISNAPTNPEG*
Ga0114344_10007438	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFDGMAEFDHIVARDEPDNIESHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTRNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGAKEFYQPVVPITSNYTLTWDDSYLDLTIACIEQKLVAFPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF*