Scaffold Ga0114344_1000383

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1000383
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23740
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (34.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y
F042328	Metagenome	158	Y
F065775	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100038310	F001775	AGG	MKELLDDERIRISIISFLIGVILAFVIYPRPEIETVYKTETKVETDTIYSRVVDTIYIPKTRIKTEVIRDTILIDYKPKIRAFQTSFPSAYGSTKVSGEVLGEVLKMTSTNDFKIPVVTNTITETKTETKVIKPKGIYLGAGVNSLLQPSGKVSYLDNKYLFEYQFQPLQGVHQIVVSKKLF*
Ga0114344_100038311	F036704	N/A	MWIEIEIMLSGQTIDWKALGLEVQHEWSRRMVRIGDIQYVQELMHDIQIISFYDNTSCLIKGRYQDIRTEILHLDQENDLD*
Ga0114344_100038313	F008081	N/A	MEEIEILNPFGYGKASKVIDENRKPAEWWVDYIQLNEVVSENEFYILFADGFLIKKGRSKFRSSQYLKGDRFKSFKECHESQI*
Ga0114344_100038324	F008073	N/A	MKATILKHLQKMEFVCGLKQFKDYNQEDATNLLECLDKLFSSYGWMNESRVDYILHAGMRGQYGDFYHVNEKSVSGWINQYYAHHQSQIVQEVQAMNNVDREPTNEEIEYWIEIGKQIFRDNYQYAKDHGYCKDLAEWGANWFNKFQEKGILKPWMYQVEDIENDVRRELRLTTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI*
Ga0114344_100038329	F005529	GAG	MPRMLPKSRLDYSLEIRYRLSSGEWSKWMNKGKGSFQSIEIVQQQIRLLAASFKGREKEIRFEWNGWLCDYAGLPTGEVISLK*
Ga0114344_100038333	F042328	N/A	MDSKPKTKLGNGKKRSDSWITASLCLSDAEAHAYTYNGKKYVNLNVNIYDKPNEYGKDVAISLNDYKKEEGSKPQVNKMPATPYQAEEYDLPF*
Ga0114344_100038336	F065775	N/A	MSNFQLNFNSPKKVVSITLDEEEGIFQLAYLFKKLLDDAGIPNKLEEKEVEAVEAIEESNK*