Scaffold Ga0114344_1000152

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1000152
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54153
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (79.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y
F006657	Metagenome / Metatranscriptome	367	Y
F018177	Metagenome / Metatranscriptome	236	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100015217	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTDGIKNKADIIAALAEEGVTWSVYQKTIKDIEEAADEFSEDSEEILPRFDPKAQAEDTVLVRMTRENYRYDILGFTFTKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYG*
Ga0114344_100015218	F005054	N/A	MAEVLINSQSPVTHKVFWNGDVANADSLPTVALYDVTLDPAVSPAVSPTQLLANLTSSLDENNPGTYSVNIPYQFTDRNKTLRLQWNYAVNGTAVKHSDEVFVITPYVDFNHALDIGFSTDSSDPGYKSYRDLLMAEKYARKIIEQHTSQNFYLKDEVFVVYGDDSDILPLPSRIAELHYLYANDILLVDNIEEINNWNYDVMLSESGYGIRINRASMIDNTVYVANGMIPPSINDHSNGVFQSGVPYRVYGKFGWDKVPDNVELAAIELMKDYFSKDTVWRNKYIQSIQTFDWNFKYSDQSFAGTGNNYADQLLADYVLSKSVVI*
Ga0114344_100015219	F001229	N/A	MNNLIDAVLSMTMDVYRQFDTQDEDTGAIVKEWHYYKSVACHAKGVVSNSSTTRSGDKQIFDNRYTNDQTIQVRTAERITAREKITNIRDSDGNVIWVEINFPTDTPTVFEVMGNTPITDPFGKVVAYNSTMKRSENQVIGQ*
Ga0114344_100015221	F000258	GGGGG	MTDYKADVMLDLRKYLWSELKDNNIFEPTDYYSDNIGQEIVPIIPIQQSPEMNQFLSGKKHIVYDKIGISYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFVADISPTAPSEELAGFLSTDIILEVKYARILDSAGRFL*
Ga0114344_100015224	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDADEEDEVVQGKTFEDIQRQALGIKASGDDIVSLQGSFAAQAGFGIGAGLGYAEE*
Ga0114344_100015248	F018177	AGAAG	MPNINEFLHEPEKVFAPELEKIGGAKPCSKCDKDSEEYFWDAVTMTISWECPDGHKNSYVVG*
Ga0114344_100015254	F006657	GAG	MTLASLKKIQANRVLGIDASTNSIAFCLMENDIPLKWGKIDLVGQDIYEKIYNAKLRMNLMLDELKSDYIAVEGAILVRSPDAVIKLSYVYGVVIAELMSTGSKVITISPS