Scaffold Ga0114344_1000032

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1000032
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67672
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (81.94%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F003408	Metagenome / Metatranscriptome	488	Y
F003643	Metagenome / Metatranscriptome	475	N
F010085	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100003210	F001464	GAG	MARTTRQRVQKKLIYFFLNDKIHKVLKSSRSKDEVIAWCYPDKKRMLYSYSDIKKYSETAYTINDVCKMLNKHKVTIIDYILEGKIKAPQKVYPISNPESTWSKYMFNQKDIYDIHQFILDAGHSSEIPSKKELEALLKHNIILYTKTNDGSFVPVWKAD*
Ga0114344_100003225	F003408	AGAAG	MPELIQTLKAVNKKEDENRRFMASMQGVELNEQNTTEGPSFEDVRRRALGVNASGDDVVSLQGSFAQQAGFGIGAGLGYSQE*
Ga0114344_100003228	F000258	GGAGG	MTVNYKIDASYEIRKYLWDQFLTIGIFEEDDYWSDNLGEVTVPIIPVQQNAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQIAFTLYATNVAEIGEMRNFITDLFRRMDDSAADVNTFLGVNSKFKFHSIYVAEISPTEPSEELKGFFSADVIIEAKYSRKVDGRGRFL*
Ga0114344_100003230	F001229	AGGCGG	MNDLVEAVLSMKADVYRQSELQDPDTGEILRSWMYYKTVNCHAKGVISNSATTRSSDRQTFSNKYTNEQVIQVRTLDRLISREKITNIRDSAGNVIWKEIDYPNETPTVFEVIGTTPITDPFGQSIGFSTSMKRSENQQIGY*
Ga0114344_100003253	F003643	AGGAGG	MKQDLNNDGKVTMQEKILAALASYGRHFLGATIALYMTGNTDPGDLIKGGIAAVLPVILKALNTNEPAFGFTKKQ*
Ga0114344_100003259	F010085	AGGAG	MKIQVVSEYLTLAREGLVPGIECPMDQGLLFCNQDLEDNIFFYCISCNYKNYIGIEVYNNLEKIVNGNR*