Scaffold Ga0114343_1042839

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1042839
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2895
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F012774	Metagenome / Metatranscriptome	277	Y
F017132	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_10428395	F006935	N/A	MKKEYAKQIIEWAEEAKQYLTIRKEIILDENTTDQQLGEIVRHMYKSKVVSQNETIEKTKQNIK*
Ga0114343_10428396	F017132	N/A	MIRKVETAKVGNDLYEIVKKIPIQRFSKEINGEYADTLKQYYGVEKILKFNQTMEYLFVNLIPELQTITNDKETNEIPQ*
Ga0114343_10428398	F012774	GGA	MKDVPIILHIDLENQSVNGWLNENRYIIFSELVRYSKKLLTENLDNVQAIMVSNHYDNLVFILKKENIKLTLDKAMEYFMDVEEYEKCAEIRDLNILIQNLENETANIKILNQ*