Basic Information | |
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Taxon OID | 3300008110 Open in IMG/M |
Scaffold ID | Ga0114343_1028813 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2342 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000962 | Metagenome / Metatranscriptome | 820 | Y |
F090286 | Metagenome | 108 | N |
F091905 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114343_10288131 | F091905 | N/A | MRKPIGATYKQLKDNNIEWICCSDYSHRSIEKPVWVLRHSSEYEWAKERTMLLQEIANLKRDCHHLAKHIDPFLTNIETYNILRKYISEYPEKRFMDK* |
Ga0114343_10288132 | F090286 | GGA | MNILNLFKKKSLEPETPKIETLLPEQHYVKISLEVEYLLGKQLYIYTSNYVVTCENEQMFNEGKEKQAKIFSAIIKDIHEKLDDKSSDYIRVGESMLLKKSDFVNARIVYNYKKTNEYPRS* |
Ga0114343_10288133 | F000962 | N/A | MNIHAPEELKKKYPQYEFRGKRREINDRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLQKVK* |
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