Scaffold Ga0114343_1028813

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1028813
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2342
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F090286	Metagenome	108	N
F091905	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_10288131	F091905	N/A	MRKPIGATYKQLKDNNIEWICCSDYSHRSIEKPVWVLRHSSEYEWAKERTMLLQEIANLKRDCHHLAKHIDPFLTNIETYNILRKYISEYPEKRFMDK*
Ga0114343_10288132	F090286	GGA	MNILNLFKKKSLEPETPKIETLLPEQHYVKISLEVEYLLGKQLYIYTSNYVVTCENEQMFNEGKEKQAKIFSAIIKDIHEKLDDKSSDYIRVGESMLLKKSDFVNARIVYNYKKTNEYPRS*
Ga0114343_10288133	F000962	N/A	MNIHAPEELKKKYPQYEFRGKRREINDRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLQKVK*