Scaffold Ga0114343_1022858

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1022858
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2728
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015581	Metagenome / Metatranscriptome	253	Y
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y
F041194	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_10228582	F041194	N/A	MDDLQITCNYCDIPAKIKRDKIYMQCHCCDDRRIIDVREYLLEDKHHDYLYSMFSDNFVYNEAKA*
Ga0114343_10228584	F024308	N/A	VKKVILTKIEYEFLIECLEKLEKHTDDSLADSKWFEKMDTTRRQYELEMEHFNIKKYGVPSTKYQMVKWLLTKVKTKSLDF*
Ga0114343_10228585	F015581	N/A	MSKLNKPNAFVFKAFIDGEYRLCVCPRIDNKWSEADIVYIKDDPYKEFDEVLDNKLFSVIFVGYEPDPNGSIGFTIKNVNSNYIKSDTSIASEMYNEGSFFSTIEKGYQHFYEQSITSEREGVGSQTSEQENL*
Ga0114343_10228588	F024548	N/A	VCMKSADNVVEIEESELKKYTKLKEGIKIEPNDCVHIYDNFYAKLSKGSIVCKEVVNKHNTILRKK*