Scaffold Ga0114343_1015749

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1015749
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3481
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F017133	Metagenome / Metatranscriptome	242	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_101574910	F048982	AGGAG	MTIELRDVLSICRQIRGNDRDSGTHYLLGYLWANTSDKEKMRIAKLFADDLAELGNDNE*
Ga0114343_101574911	F017133	AGGAG	MSIWTKFPTVNNYPQGMMNLCPCGQVVLAPALYHEGFPWWENPNQCKELFEGVN*
Ga0114343_101574912	F045756	N/A	MTKYNVLISYVVEAEDEMRAVFALNKSLVPLSENELSKFDAFLVEESQ*
Ga0114343_10157495	F000808	AGGA	MEYNYSLTVSYDGELVSTTRSADMLEIVTAWNKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGKVTLR*