Scaffold Ga0114343_1010529

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1010529
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6455
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011760	Metagenome	287	Y
F015209	Metagenome	256	N
F025741	Metagenome	200	N
F056602	Metagenome	137	N
F076087	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_101052911	F076087	GGAGG	MYSDAEMEDVLFPHMLTDEQLDEQYDIEPDCEDPWSEAWMDANALESAGWGEDDRCSGDDW*
Ga0114343_101052912	F011760	N/A	MPYYIGMENTITQRMVLRVRIQDVSDRSSSIEYVGQGTWFDGKPYIVTRYKSNPTNFYFFVYNSFVPEYNYFDAMNSGIGKEIWDLNPDNGNFSGKTYVYSTMLDKMYEPYSVSPVQSSPCCLFEVR*
Ga0114343_10105294	F015209	AGG	MNNYRHKALSLWSAMLAEERWHKFESTNCKPSCKGWNGWAPFCECFENHCTFVPKGNIEDMELVIVAKPIDDVLRNIQVVP*
Ga0114343_10105295	F056602	AGG	MSNWTKGFIGVAIASQVILFVILFGCKAGDAFYISGVDLFGMVMSSVCSLVYIPAILVSYDSDKVQKKLDEQLQA*
Ga0114343_10105297	F025741	N/A	MPYTIVMRNTTDPIIQFVNDNVEGEPLFKGYVVVELAILVRQNPTMSMSELLQDATEVALEEWDRDLNQD*