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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008110 Open in IMG/M |
| Scaffold ID | Ga0114343_1003932 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12955 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (58.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001561 | Metagenome / Metatranscriptome | 670 | Y |
| F039139 | Metagenome | 164 | N |
| F057375 | Metagenome | 136 | N |
| F060908 | Metagenome / Metatranscriptome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114343_100393219 | F001561 | GGA | MQTPEQKLKLLNKTIETIWHGVSDTKEGNYPKIISLYKEVLKLNPKDRDAWENMVWLMWSLSINKKDTAWMLEAEKFVKMYLSIMPNGYRSYEFVGQFYRVMLKDKKLAARYLESAIRWKDAPVTTHNSLIAIFNDLGDKRKAIDYCKLTLARFPNDPYAKSKLETMTKL* |
| Ga0114343_100393225 | F039139 | N/A | LILRAHDTDISIQELVEISDALDYDSIARTALMFDDTELQTQAALSHAEDLMIMDGLWITEPKRFQMP* |
| Ga0114343_100393226 | F060908 | N/A | MTRKLDYTISETISARSKNRILVPKKYIKYIGLNVGFVAHVTNLNGAFIVSACPTPESKKFMVDKDGAVRFYGNNSKYKIMIDSQSA* |
| Ga0114343_10039323 | F057375 | AGG | MEQTVHFVNASDFFDAIELGDAESAEFLEQFTYGDALTDITLVARTTFLQRLTKFIGECEDIYEKDVVMQSLKEYNFGLLSAVKHINIEA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |