Scaffold Ga0114343_1000432

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1000432
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58645
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (15.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_100043255	F000716	N/A	MEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLSAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDVSIINTLNFKDLNINKSDIITIFIQEGILPKNFLSLEGPQVNIIQLPRLKNE*
Ga0114343_100043258	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPENKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYNL*
Ga0114343_100043262	F076869	N/A	MITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*