Scaffold Ga0114343_1000280

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1000280
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35640
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (56.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F006785	Metagenome / Metatranscriptome	364	Y
F068609	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_100028026	F001841	N/A	MFTPPNFLLGLMRVVAWAFWRDPVAKPEPPQPKRPRKPTLGYTVGDIPFELLAVVRVSWYRKGLAYEVEEYKIEESEDAQAQFHYVVGTALKQGADVCVLTQYQPEELGVPV*
Ga0114343_100028032	F006785	N/A	MSQGIPSAEPRQDRTMSGGEWTTKGRQREAREAEREQLRLEKRHLRDLRWAIERSTIEASDWTDLLALQAAHGKEGPIQLWRELVPYWRDCQRLNGGADIPAELFPQATGLFPRTPEPAPAAPANRQKAARGVSRARKRRSDAGKAQPSRKAPTA*
Ga0114343_100028033	F068609	AGG	MTIFRTTEPRGTFRVTYETVTAASAEQGDCADRGWLSWNGSPADEYSDSVWDLRDLTEKLAGCYAEGTGERVPSWISLDPGSDFWLSPFWRDLAGEDALGVTAYVHRPDWITDASWLRVCRLLGWRWRY*