Scaffold Ga0114342

Basic Information
Taxon OID	3300008109 Open in IMG/M
Scaffold ID	Ga0114342_1020786 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-53-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0114342_1020786 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-53-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2399
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2399

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F008991	Metagenome / Metatranscriptome	324	N
F010534	Metagenome / Metatranscriptome	302	N
F014823	Metagenome / Metatranscriptome	259	N
F017436	Metagenome / Metatranscriptome	240	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114342_10207861	F017436	AGG	MDGQYRKMFRETVITVQKLSVSAAVFTVTERRNNIIPQKTTIRCRAVVRMMINEIKDDITTLSRDSDRYKLKRIQLALYILLSQALSIESSNERYKELKDMYYFMDRLKTTTFDEWKNFLITGSTEFFDNRF*
Ga0114342_10207862	F008991	N/A	MNLTVEITEQVEKKLEAVLKGKYDNRTIWMYYKVSLQMLRDIIEDLIACHHTTHPLAEKDLYYEQNKAQIVDWIQWIQNRTSSDKLVDLDKLLSKLIRDKAENLVEALTEENPSDRMTTLSMLQMAVQMALFTEVQQLLKSPIVIQFCKEHGWTI*
Ga0114342_10207863	F010534	AGAAGG	MSDKVEEKEKAIMNLIDLEIKKALKDQASRLEVLQDRIREAIDVSATEHSQGIKQVMIFVTKAHVQAWIASLKHKIDTAGDCEICDLEKILGEESLEIAEAVKVALNNRNEETRNRVLRELLEETITKIEALAVRVPQVPQP*
Ga0114342_10207864	F007918	N/A	MCDTTLEESDPFLNLELDIEAGIKQELLSILANVETVTEAMDRAILKEEDRREQFKNLCSSIDHLFGENIEMIEKRKDDLKEIDPSLHAIDCKLSTRMTRLRNVAIKPDLKSMKTEMRKVLSQQRIERLQTNPQQEEQRPQKG*
Ga0114342_10207865	F014823	N/A	KKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYEWKVYRQSRSEKEIGNLQSIAVAEEKVDLPESLEIL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114342_1020786

Overview

Ecosystem & Geography

Associated Families

Sequences