Scaffold Ga0114341_10267975

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10267975
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F009333	Metagenome / Metatranscriptome	319	Y
F039624	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_102679752	F009333	N/A	MNTIRFNRHELFTEDWMNYHSETLRVVEDFHMSRNESWFNTVYNMLCGIWDGYLYTDLLESAKQLGLPTHILQRIANTIRFIEINKK*
Ga0114341_102679754	F039624	N/A	MMQDEQRYESSVSKDYDNHLKNLRERGYVTQILLDYVDKKGAVSHKELESYYKQITGSNSFSHVLQSLRTPYKNRKTQRYVAKEGKQYSNAKYIIKVANPSNWVVA*
Ga0114341_102679755	F005630	N/A	LGSCLILKNNKNKVMANLYEVEGFYGTRNRGTILVYETFSGKRWYCVEGSCNINCTYDEINEGCDVERLSDIDTMSSRDGIYSARELCDFVIN*