Scaffold Ga0114341_10152060

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10152060
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F016523	Metagenome / Metatranscriptome	246	Y
F077210	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_101520601	F016523	AGGAG	MYQYFIISPRLGNPGDQFIPDEGVNIDALLDGGLISTDSVKKSSKVKSEPKEQ*
Ga0114341_101520603	F001326	GGAG	MAVYSVTQKYLIDNYAVLQLLTPSEIAVGQSITVASVDATFNGSNLVVRALPQYLYIGIDTEGDLLYDINVPIANQVLYTKVAADVERVAATGTVTYTQTCTWVTAAQLVTYLGVQITNPSDDYTLITQAVSAGNDFAYRRRQEAGYIDSLTTSPGGDATLGTLMYCAALWRSRGSLENTFASFDGMGTAPQQSLTPIVKQLLGIDRPACA*
Ga0114341_101520604	F077210	N/A	AQAIEFYEQIRGLMSVELPSTLGRNFSYAGYVSTFIADSTQVQSITIA*