Scaffold Ga0114341_10125868

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10125868
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2895
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F014089	Metagenome / Metatranscriptome	266	Y
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_101258682	F009503	GAGG	MDKVQFECRKCKKITTQLIHKITDNLPEGVEVIQCTKCEVMGVAQIGNSNANL*
Ga0114341_101258684	F014089	N/A	MSDLIEIIYPQSMTAKLLQNGEVIAEYKVEQCDGCDKLLKLDPFGYKVGQAGEKLAWLCGGCR*
Ga0114341_101258685	F005697	AGGCGG	MGFLDNYEASRERLERWLATYPTGRIETRIVEFSAEKGYVLVEARAYRENDMIPAGIDYAYGYQAAYQPNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKIANAEKDYDYWTTKFGDVPSHKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQAAEGAPKNWGGYFCTERTKATQCTPRWYVLTSSGKWVVTTLPR*
Ga0114341_101258686	F025683	GAG	VVTLTAKNRENSKMVLDLLDPETLGRLVLVIILMVISAAAGYAKGFKEGKREGIARRKAMVRHIANKAVK*