NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10107975

Scaffold Ga0114341_10107975


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10107975 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2291
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F006743Metagenome / Metatranscriptome365Y
F016263Metagenome / Metatranscriptome248Y
F041644Metagenome159Y
F042880Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1010797511F006743AGGAGMRTENWQSNMRGLRLVGEGESGSASTIFGPVKAGLTTSHRTQNQVLSELLNCLEREVESLNSKYCEAYVTLMLVMEHLARLSAIITEPRTTDTL*
Ga0114341_101079752F041644GAGGMLTSKGGESVSLEFIIDRLTSVQVGGFWALMQVITYALAIWLGLVILSKISDKRKGEGK*
Ga0114341_101079753F042880GGAGMANYTTVGELIEHLKGEDLEAPIIYQYYLAEHFEISEEVFAEVARDFDSLIPCSDSYEAISREIDSKREEVNV*
Ga0114341_101079756F016263GAGGMPKCGVCGWSFGGWAMTKHAETPCGEDDRKAEARPYTPEIDDLIKMKEEEEGNE*
Ga0114341_101079757F002827AGGAGGMNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNQINLINYKEEKGNA*
Ga0114341_101079758F005146AGGAGGMRNVNFYEVQDRKGDVAWGGASASEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIVGERGRA*
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