Scaffold Ga0114341_10073245

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10073245
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2150
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023523	Metagenome / Metatranscriptome	209	N
F051731	Metagenome / Metatranscriptome	143	N
F067410	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100732451	F067410	N/A	LMQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGETEMYTVSGLDTEQTPATIEWKVVSEAYPANDITTANNCTPYLIAAYNSHLEIKAGRVVSLIP*
Ga0114341_100732452	F051731	N/A	MNTFEHNKNLLKSINTFNLLEKTRYNAPRDKKQITNLNPTIRPPKQIHHKIIDNDKINNPYKGIAHIDYVKKDTPPYYGLHETGSRSISYNDFFKVK*
Ga0114341_100732454	F023523	N/A	MISEQTLEGWDNNPVKFSNVKYPQTKDDNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKMYFEGNEIPQRIILICSTAHSDSNRVFKSLKNLDWDNDVIEDYNDSLLEDKMEELKFDLDHAKEYKLYKSVYKKFKECKDIDELKDDEMKLLYKFDFVKFSELEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATDESYNALVIDATKGRPIFKKNFESILKID*