Basic Information | |
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Taxon OID | 3300008108 Open in IMG/M |
Scaffold ID | Ga0114341_10073245 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2150 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F023523 | Metagenome / Metatranscriptome | 209 | N |
F051731 | Metagenome / Metatranscriptome | 143 | N |
F067410 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114341_100732451 | F067410 | N/A | LMQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGETEMYTVSGLDTEQTPATIEWKVVSEAYPANDITTANNCTPYLIAAYNSHLEIKAGRVVSLIP* |
Ga0114341_100732452 | F051731 | N/A | MNTFEHNKNLLKSINTFNLLEKTRYNAPRDKKQITNLNPTIRPPKQIHHKIIDNDKINNPYKGIAHIDYVKKDTPPYYGLHETGSRSISYNDFFKVK* |
Ga0114341_100732454 | F023523 | N/A | MISEQTLEGWDNNPVKFSNVKYPQTKDDNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKMYFEGNEIPQRIILICSTAHSDSNRVFKSLKNLDWDNDVIEDYNDSLLEDKMEELKFDLDHAKEYKLYKSVYKKFKECKDIDELKDDEMKLLYKFDFVKFSELEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATDESYNALVIDATKGRPIFKKNFESILKID* |
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