Scaffold Ga0114341_10071280

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114341_10071280

Scaffold Ga0114341_10071280

Overview

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10071280 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2187
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100712802	F046173	GAG	MLSLKDREIYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTVLNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEINTFYKEKLIGRLNKLKDTIKNDIPIKISEIQETHQRIRKDQSKLSKMKQDPRYNNMQQWGIQLSLERVIEINSKLMNLTKLLNYIKEKQEEQE*
Ga0114341_100712803	F041008	N/A	MPIKDEAEMARTLNKLIIADIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVINDRLHFQNKLEEVLEQRSSIENNKAVIALHSVTHTIERELRIVGDHNMVTLYKIDNELLNLKMMYEYLTENFNPHVVTKG*
Ga0114341_100712804	F054566	AGG	MEKEKNKAEITLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITNEKSVKVKQTNKDAN*
Ga0114341_100712805	F055421	N/A	MEEFTNPYKEINIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGVILIIYLKLNSMARIIENLSYSMTVIKIGMIGVSLEQIICNNIIESVKVVILLHFLTVAICLPSGDEIESNLIKLTIGY*

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