Scaffold Ga0114341_10070765

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10070765
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2197
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F022147	Metagenome / Metatranscriptome	215	N
F024477	Metagenome / Metatranscriptome	205	Y
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100707652	F017597	N/A	MKKSFRSEKLLIELAITRKESIKTTKSSKSTLIKTEMITRILIAALKAKQVIAIRFQVNQTNNLQIWGQDPNILNA*
Ga0114341_100707653	F024477	N/A	MSYDIIKNSLKASSFELLIKSITLIEKVEDFYKEMDQITSYRFKCHGKPDPDIYYMKDIIKIRLMELEKLQMQRINELINLSR*
Ga0114341_100707655	F039941	N/A	MDIETLALRLEEIKLSRIEVLKEKKVLAEELLDGKLRIGLKRSIMENMSLLIQLDFTLNEAEILYENLIECRLLHARYRQQSS*
Ga0114341_100707656	F037570	AGTAGG	MNIKKLDLLKIRNLKFRASQRQVVINRLLRKKDLERDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINGY*
Ga0114341_100707657	F022147	N/A	EKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIATLEKVAIANKLLIKTLSEEIRNALKEQLTLVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSRQWSNEYQET*