Scaffold Ga0114341_10067160

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10067160
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2843
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F017972	Metagenome	237	Y
F023834	Metagenome	208	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100671603	F017972	GGAGG	VRTRHLQLVTPEHSVTTRVREGVSSPYGPVNPASTTLVSQRTLRENQLRQLSELLSSLENVVESLNYKSFTAYDTLVTATEGVRVALSHIVIEEDGTDTL*
Ga0114341_100671604	F095162	GGAGG	MENEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPEAYKELLEKEKVSDEQEGKTWIDLNGSTISPRITARAKARGITLTQTDTDQGNNGGEA*
Ga0114341_100671606	F023834	GGAG	MNKEYWQAKAELCRDLALMQIEEEETEKEAGMNLMRMTYALSMVEAYSEGKGENE*
Ga0114341_100671607	F003212	AGAAGG	MKDRYLVTLEIETYDGDPKEWDWEKLSTGEDVINIISSDFKGRVLPIEGEGDE*
Ga0114341_100671608	F093528	AGG	MTEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPSKTINDVVKEEIEEKGESDEG*